Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVPFRRTSKAKKRKRRTHVKLQLPGMNECSNCGEYRLSHH-----VCPECG-QYDGKDVANS----------
1JJ2 Chain:Y ((1-73))
RTGRFGPRYGLKIRVRVADVEIKHKKKHKCPVCGFKKLKRAGTGIWMCGHCGYKIAGGCYQPETVAGKAVMKA
General information:
TITO was launched using:
RESULT:
Template:
1JJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4609 for 300 contacts (15.4/contact) +
2D Compatibility (PS) -6129 + (NN) -2723 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -7293.0 ( -24.31 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_1JJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJ2-query.scw
PDB file :
Tito_Scwrl_1JJ2.pdb
: