Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKITPPQPFLFEKGKRAVLLLHGFTGSSADVRILGRFLQENNYTCYAPQYRGHGVSPDLLLKTGPNDWWEDVLEAYDHLKSLGYTEIAVAGLSLGGLFSLKLGFSRPLKGIIAMSTPTRMDSSSPIIQGFLDYVRNYKKLEGKTTEQIDAEMVAYKDAPMNTIAKLKDEISGVVAEIDMIYAPIMVVQGEKDDMVDVSGAQLIYDTVESTKKELHWFKESGHVITLDKERKEVNQAILTFLDSLDWQE
1TQH Chain:A ((6-246))
----PPKPFFFEAGERAVLLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWWQDVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIESPVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLESLD---
General information:
TITO was launched using:
RESULT:
Template:
1TQH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146478 for 2061 contacts (-71.1/contact) +
2D Compatibility (PS) -25664 + (NN) -6866 + (LL) 908
1D Compatibility (HY) -28000 + (ID) 6450
Total energy: -212550.0 ( -103.13 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_1TQH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TQH-query.scw
PDB file :
Tito_Scwrl_1TQH.pdb
: