Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLIFAIVQDQDSNRLSDALTKGNF-GATKLATTGG---------FL--K-----AGNTTFIIGTEDERVEDALAIIKENCKAREQMMTPSASLGVTVDTYVPYPIEVQVGGATVFVMPVESFHHF
3NCQ Chain:A ((1-101))
MKKIEAIVRAEKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAFT--------------G----------SPGDGKIFIIPVEDVVR-
General information:
TITO was launched using:
RESULT:
Template:
3NCQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47332 for 532 contacts (-89.0/contact) +
2D Compatibility (PS) -9195 + (NN) -3703 + (LL) 1692
1D Compatibility (HY) -4800 + (ID) 1100
Total energy: -64438.0 ( -121.12 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_3NCQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NCQ-query.scw
PDB file :
Tito_Scwrl_3NCQ.pdb
: