Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQFAVDFIEASREEASAILEFLNTVTEETDFILHTVSNQLSLSEMETFIENTLMTKNCICLIAKLKNKVIGLITIISQSDIEIEHVGDLFIAVQKDYWGYGIGHILMEEAIEWASDNDITRRLELSVQGRNERAIHLYQKFGFEIDGLQTRGIKRENGEFLDIYRMSKLID
2GE3 Chain:A ((6-168))
----DTVTIKPIRAEHVESFHRALDAVSRERKYLSFLEA--PPLEAVRAFVLDMIEN-DHPQFVAIADGDVIGWCDIRRQDRATRAHCGTLGMGILPAYRNKGLGARLMRRTLDAAHEF-GLHRIELSVHADNARAIALYEKIGFAHEGRARDAVS-IDGHYIDSLNMAIIFG
General information:
TITO was launched using:
RESULT:
Template:
2GE3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130560 for 1178 contacts (-110.8/contact) +
2D Compatibility (PS) -17666 + (NN) -3771 + (LL) 492
1D Compatibility (HY) -7600 + (ID) 2000
Total energy: -161105.0 ( -136.76 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_2GE3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GE3-query.scw
PDB file :
Tito_Scwrl_2GE3.pdb
: