Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEK----------GLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEGKMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELA---NHVSVETGQFGADMQVSLINDGPVTIVLDTKNK
3KO5 Chain:B ((1-157))
MRVVIQRVKGAILSVRK-------KELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHDI
General information:
TITO was launched using:
RESULT:
Template:
3KO5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87574 for 949 contacts (-92.3/contact) +
2D Compatibility (PS) -15023 + (NN) -6791 + (LL) 416
1D Compatibility (HY) -14400 + (ID) 2800
Total energy: -126172.0 ( -132.95 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_3KO5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KO5-query.scw
PDB file :
Tito_Scwrl_3KO5.pdb
: