Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLFITFEGPEGAGKTTVLQEIKNILTAEGLQVMATREPGGIDIAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSLAYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLEKLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL
4S35 Chain:A ((1-194))
---MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTEE---LDERTELLLFEASRSKLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRL-----KEKNR--FENKEFLEKVRKGFLELAKE-EENVVVIDASGEEEEVFKEILRALSGVLR----
General information:
TITO was launched using:
RESULT:
Template:
4S35.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92201 for 1596 contacts (-57.8/contact) +
2D Compatibility (PS) -21059 + (NN) -8997 + (LL) 1060
1D Compatibility (HY) -17200 + (ID) 3600
Total energy: -141997.0 ( -88.97 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_4S35.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4S35-query.scw
PDB file :
Tito_Scwrl_4S35.pdb
: