Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNIAYIALGSNIGDRETYLRQAVALLHQHAAVTVTKVSSIYETDPVGYEDQAQFLNMAVEIKTSLNPFELLELTQQIENELGRTREVRWGPRTADLDILLFNRENIETEQLIVPHPRMYERLFVLAPLAEICQQVEKEATSAETDQEGVRVWKQKSGVDEFVHSES
1RU2 Chain:A ((2-129))
---VAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPP------PDYLNAAVALETSLAPEELLNHTQRIELQQGRG-----GPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPEL-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1RU2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108402 for 924 contacts (-117.3/contact) +
2D Compatibility (PS) -12609 + (NN) -2400 + (LL) 3000
1D Compatibility (HY) -9600 + (ID) 2900
Total energy: -132911.0 ( -143.84 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_1RU2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RU2-query.scw
PDB file :
Tito_Scwrl_1RU2.pdb
: