Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIIDK-LKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK
3T1Y Chain:M ((2-122))
-ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKK
General information:
TITO was launched using:
RESULT:
Template:
3T1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36032 for 746 contacts (-48.3/contact) +
2D Compatibility (PS) -12650 + (NN) -3077 + (LL) 208
1D Compatibility (HY) -11200 + (ID) 3700
Total energy: -66451.0 ( -89.08 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_3T1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T1Y-query.scw
PDB file :
Tito_Scwrl_3T1Y.pdb
: