Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNQNQLISVEDIVFRYRKDAERRALDGVSLQVYEGEWLAIVGHNGSGKSTLARALNGLILPESGDIEVAGIQLTEESVWEVRKKIGMVFQNPDNQFVGTTVRDDVAFGLENNGVPREEMIERVDWAVKQVNMQDFLD-----------QEPHHLSGGQKQRVAIAGVIAARPDIIILDEATSMLDPIGREEVLETVRHLKEQGMATVISITHDLNEAAKADRIIVMNGGKKYAEGPPEEIFKLNKELVRIGLDLPFSFQLSQLLRENGLALEENHLTQEGLVKELWTLQSKM
2PMK Chain:A ((4-227))------ITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQ--DNVLLNRSIIDNIS--LANPGMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL---------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2PMK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100941 for 1630 contacts (-61.9/contact) +
2D Compatibility (PS) -22872 + (NN) -7799 + (LL) 5188
1D Compatibility (HY) -19200 + (ID) 4150
Total energy: -149774.0 ( -91.89 by residue)
QMean score : 0.453

(partial model without unconserved sides chains):
PDB file : Tito_2PMK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2PMK-query.scw
PDB file : Tito_Scwrl_2PMK.pdb: