Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSNTWKIYILAIVSFLVGTSEYIISGILDQIAHT----LGITLAAAGQLITIFSLVYALSTPVLMALTASMDRRKLMMYALGLFVFGNVLAFVLPG-------YGWFIAARIIMAMGAGVVVVTALTIAAKIASEGKQGSAIATVVMGFTASLIIGVPLGRMIAVA--------------LGWKSVFGAIALLGLIAMVVIFFTLPYTEGDKPVPLLQQ----LALFKK----RKVAMGLSITFFWLGGYSVAYTYLSPYLLNISGINGKL----------LSGVLLIFGIASLVGSKFGGYSTDKWGVPFTLVGGMTLHIVTLILLSL-VTH--SYIGVLVILILWSFAAWSTGPTQQFHLATIEP-EMSGVLLSMNQSMMQFAMAVGAGIGGVFVENVSLASITWVGALGVMIAIIASLLIFNSQPKQALKDINQ |
| 4J05 Chain:A ((39-513)) | --------LAGVGFFLDAYDLFIINQVAPMLAQVYFPKTGLPAQRQDLMKAAANIGCVVGQVMFGVLGDSFGRKFVYGKELILIIVATIFQMSAPSHWDGNRVLTWITICRVFLGIGIGGDYPMSATVVSDRANIHRRGTLLCFIFANQGWGSFVGSLVTIVTISGFKHRLKSGHTHDVDKAWRILIGLSLIPAFGTLYQ-R-----------------WQEFVAYFSTWNHFRNLLGSMLGWFLVDIAFYGINLNQSVVLAQ-IGFAGKTGDVYDKLFQLATGNIIVTALGFLPGYYFTLFLIDIVGRKKLQFMGFIMSGLFLAILAGEIDHIGKGPLLACFTFMQFFFNFGANTTTFIVAAELFPTRIRASAHGISAAAGKCGAILSSLVFNQLKAKIGTSAVLWIFFSTCILGFIST-FLIDETMGVDPDEKD- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J05.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -415100 for 3273 contacts (-126.8/contact) +
2D Compatibility (PS) -36368 + (NN) -3242 + (LL) 2160
1D Compatibility (HY) -14400 + (ID) 2350
Total energy: -469300.0 ( -143.39 by residue)
QMean score : 0.355
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