Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKIKKFTAASMQEAALLIRKELGNEAVILNSKKIKKRKWFGLVNKPAVEVIAVLDQDFLEKKTPQKAAEPKQTLKTPVSSPKIEERTYPPQIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGLTEENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCY---TKEE-FQQAKELF--SEYDHVFVDTAGRNFKDPQYIDELKE----TIPFE--SSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR
1RJ9 Chain:A ((100-303))----------------------------------------------------------------------------------------------------------------------------------------------------------------------------PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLE-QAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE-GPDDLQPFDPEAFVEALLE


General information:
TITO was launched using:
RESULT:

Template: 1RJ9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1059 -133954 -126.49 -701.33
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -126.49
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.544

(partial model without unconserved sides chains):
PDB file : Tito_1RJ9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1RJ9-query.scw
PDB file : Tito_Scwrl_1RJ9.pdb: