Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKTGYFLLEDGNKIEFELYPEAAPGTVANFEKLAN--EGF-YDGLTFHRVIPGFVSQGG-CPHGTGTGGPG-YTIKCETEGNPHTHEA-GALSMAHAGKDTGGSQFFIVHEPQPHLNGVHTVFGKVTSGLEFAKNM-----SNGDVMKEVRVEG
2RMB Chain:S ((19-158))------------RVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITI--


General information:
TITO was launched using:
RESULT:

Template: 2RMB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain S - contact count / total energy / energy per contact / energy per residue : 616 23189 37.64 179.76
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain S : 0.77

3D Compatibility (PKB) : 37.64
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.445

(partial model without unconserved sides chains):
PDB file : Tito_2RMB.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2RMB-query.scw
PDB file : Tito_Scwrl_2RMB.pdb: