Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKLNLQGKTALVTGSTSGIGKAIASSLAEEGAAVIINGRREEKVNQTIDELKTQHAEAVLYPAAFDLGTEEGCNELF----QAYPEVDILVNNLGIFEPAEYFDIPDDEWFRFFEVNIMSGVRLTRRYLHNMIEKKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSISRSLAELATGTNVTVNTVMPGSTLTEGVETMLNSLYPGENLTVQEAEARFMKENRPTSIIQRLIRPEEIAHFVTFLSSPLSSAINGAALRADGGLVRSVF
2Q2Q Chain:D ((2-253))----LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPA--PALAEIARHGVKAVHHPA--DLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQ-AQHDLLAEKQPS---LAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGGWL----


General information:
TITO was launched using:
RESULT:

Template: 2Q2Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1387 -69411 -50.04 -279.88
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain D : 0.76

3D Compatibility (PKB) : -50.04
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.498

(partial model without unconserved sides chains):
PDB file : Tito_2Q2Q.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2Q2Q-query.scw
PDB file : Tito_Scwrl_2Q2Q.pdb: