Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVVRSIGKKMQRISGPNALAVKGRPTQVYGHTHVRLDCRFMADSEFTAPEVTQLAEGLHRALSKLISMLRRGDPNGAAAGDLTLAQLSILVTLLDQGPIRMTDLAAHERVRTPTTTVAIRRLEKIGLVKRSRDPSDLRAVLVDITPQGRAVHGESLANRRAALAALLSQLPRSDLETLRKALAPLERLASGEPASGPASNSPARKRA
1LJ9 Chain:A ((2-145))
--------------------------------------------------------TDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWEFVKKG--------
General information:
TITO was launched using:
RESULT:
Template:
1LJ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41453 for 909 contacts (-45.6/contact) +
2D Compatibility (PS) -15551 + (NN) -6043 + (LL) 4252
1D Compatibility (HY) -5600 + (ID) 1400
Total energy: -65795.0 ( -72.38 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1LJ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LJ9-query.scw
PDB file :
Tito_Scwrl_1LJ9.pdb
: