Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRRKVRRLTLAVSALVALFPAVAGCSDSGDN---KPGATIPSTPANAE-GRHGPFFPQCGGVSDQTVT----ELTRVTGLV--NTAKNSVGCQWLAGGGILG----------PHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAI-GNEPSLGDSLCEVGIQFS-----DDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK-------- |
2YVS Chain:A ((1-219)) | MEVHAADQYLVAPGEADLLEVHARLAGTGLFPPFPPVELPGGVGGLVARGGFAQTFFFPAEVLGLTFRTPKGRRVRAGGVVVKNVQGYDLVRLFVGSFGLLGRAEEVVLRLRPGRAQAFLRRPFSGSFPRLVPTPRFLFALEDEEGPWLYAYHFGHPKEVERFREAFGGEEARPLDLRPRFPRGLGLGEGPLWDLRFRYQDGGASPPPPPAFLRLARVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YVS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 467 for 1272 contacts (0.4/contact) +
2D Compatibility (PS) -19312 + (NN) -4883 + (LL) 0
1D Compatibility (HY) 2400 + (ID) 1250
Total energy: -22578.0 ( -17.75 by residue)
QMean score : 0.059
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