Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRIIGGVAGGRRIAVPPRGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDS-----ADVDAILAALGTNGWTREGTVAVVERATTCAPLTWPEGWRRWPQRVYGDTRLELAERLFANV
3TMA Chain:A ((186-321))
----------------------SLTPVLAQALLRLADA---RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR--FFPEVDRILANPPHGL--KEGLFHLYWDFLRGALA--LLPPGGRVALLTLRPA--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TMA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83330 for 960 contacts (-86.8/contact) +
2D Compatibility (PS) -13810 + (NN) -7582 + (LL) 3024
1D Compatibility (HY) -3200 + (ID) 1450
Total energy: -106348.0 ( -110.78 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_3TMA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TMA-query.scw
PDB file :
Tito_Scwrl_3TMA.pdb
: