Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVEPDVETLDPPLPPVPDGAVMVTVKIARFNPDDPDAFAATGGWQSFRVP---CLPSDRLLNLLIYIKGYLDGTLTFRRSCAHGVCGSDAMRINGVNRLACKVLMRDLLPKKKGKSLTVTVEPIRGLPVEKDLVVDMEPFFDAYRAIKPYLIT--SGNPPTRERIQSPTDRARYDDTTKCILCACCTTSCPVFWHEG-SYFGPAAIVNAHRFIFDSRDEAAAERLDILNEVDGVWRCRTTFNCTESCPRGIEVTKAIQEVKRALMFTR
3AEF Chain:B ((20-242))
----------------------------------DPDKTGDKPHMQTYEIDLNNCGP--MVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDK------VSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKMM----
General information:
TITO was launched using:
RESULT:
Template:
3AEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136019 for 1616 contacts (-84.2/contact) +
2D Compatibility (PS) -22679 + (NN) -8516 + (LL) 2012
1D Compatibility (HY) -19200 + (ID) 4650
Total energy: -189052.0 ( -116.99 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_3AEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AEF-query.scw
PDB file :
Tito_Scwrl_3AEF.pdb
: