Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTPSQWLDIAVLAVAFIAAISGWRAGALGSMLSFGGVLLGATAGVLLAPHIVSQISAPRAKLFAALFLILALVVVGEVAGVVLGRAVRGAIRNRPIRLIDSVIGVGVQLVVVLTAAWLLAMPLTQSKEQPELAAAVKGSRVLARVNEAAPTWLKTVPKRLSALLNTSGLPAVLEPFSRTPVIPVASPDPALVNNPVVAATEPSVVKIRSLAP---RCQKVLEGTGFVISPD--RVMTNAHVVAGSNNVTVYAG-DKPFEATVVSYDPSVDVAILAVPHLPPPPLVFAAE-PAKTGADVVVLGYPGGGN-FTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRADVEQGDSGGPLIDLNGQVLGVVFGAAIDDAETGFVLTAGEVAGQLAKIGATQPVGTGACVS |
| 3PV2 Chain:A ((9-238)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAPVLKNIMPAIVNVAVQGYLPN-RKFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKNLKSLVIGDSDKLEVGDFVVAIGNPFGL-SQSATFGIVSALK----------------NFIQTDAAINPGNSGGALVNAKGELIGINTAIL---VGIGFAIPINMVKDVAQQII------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -121769 for 1491 contacts (-81.7/contact) +
2D Compatibility (PS) -19037 + (NN) -4951 + (LL) 16928
1D Compatibility (HY) -8800 + (ID) 2050
Total energy: -139679.0 ( -93.68 by residue)
QMean score : 0.350
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