Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKQIPVQDVTPPAKGDTNNNDLYAKREKIYTRAFTGIFRRLRMVGGAALFLLYFGTVWLNWSGRQAVWWDLPERKFYIFGATFWPQDFMLLSWLLIVCAFG-LFFITVFAGRVWCGYTCPQSVWTWIYMWCEKVTEGDRNQRIKLDKAPMSGNKLLRKTAKHSLWLLIGLVTGLTFVGYFSPIRELIPELLTGQADGWAYFWVGFFTLATYGNAGWLREQVCIYMCPYARFQSVMFDKDTLIVSYDPRRGEKRGPRKKSLDYKAQGLGDCIDCTMCVQVCPTGIDIRDGLQIECIGCAACIDACDSIMEKMNYPKGLISYTTEHNLNGQKTHLARPRLIGYAIALVLMISALITAVVLRPLVGFDVSKDRVLYRENELGRIENVYSLK-----IMNKDQQDHTYILGAKGLEGLTLEGRRELKVAAG----DILNLPMELSIEPE-----KLPSTTNEIVFTIESADDPSIHKEAKSRFIGPRTR |
| 1W5C Chain:D ((1-350)) | MTIAIG------RAPAERGWFDILDDWLKRDRFVFVG-----------------------------------------WSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVS--------TPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLV------------------------GVRPYNAIAFSAPIAVFVSVFL----------------IYPLGQSSWFFAPSFG-----------------------------------------VAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGN |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1W5C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -50585 for 2275 contacts (-22.2/contact) +
2D Compatibility (PS) -34060 + (NN) -1014 + (LL) 9840
1D Compatibility (HY) -9600 + (ID) 2650
Total energy: -88069.0 ( -38.71 by residue)
QMean score : 0.081
|
|
|