Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTSYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPPCDEQRCLVVKLSAEVADLSESMRITLRDGSDGIIERLVGCLGQGRDDGSLAP-CDARHMASALYQLWLGASLLSKLHRSPGPLETAMQTTRSLLEI
3KNW Chain:A ((12-198))
----SEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTT-ETSARDKLMNYLQCWVKD-------ESCLIVKMAAEVADLSEDMRLIMNDGVKRLIARMADLIRIGQQEGSIQTSVVPDVLAQVIYQMYLGAALLSKLYKHKAPLFQALESTKMMLD-
General information:
TITO was launched using:
RESULT:
Template:
3KNW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86719 for 1238 contacts (-70.0/contact) +
2D Compatibility (PS) -19412 + (NN) -8288 + (LL) 336
1D Compatibility (HY) -20400 + (ID) 4000
Total energy: -138483.0 ( -111.86 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_3KNW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KNW-query.scw
PDB file :
Tito_Scwrl_3KNW.pdb
: