Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSEVKHSRLIILGSGPAGYTAAVYAARANLKPVVITGIQPGGQLTTTTEVDNWPGDVEGLTGPALMTRMQQHAERFDTEIVYDHIHTAELQQRPFTLKG--------DSGTYTCDALIIATGASAQYLGMSSEEAFMGKGVSACATCDGFFYRNQVVCVVGGGNTAVEEALYLANIAKEVHLIHRRDKLRSEKILQDKLFDKAENGNVHLHWNTTLDEVLGDASGVTGVRLKSTIDGSTSELSLAGVFIAIGHKPNTDLFQGQLEM-RDGYLRIHGGSEGNATQTSIEGVFAAGDVADHVYRQAITSAGAGCMAALDAEKYLDDH |
4YKG Chain:A ((229-515)) | ----------------------IYSARKGIR-TGLMGERFGGQILDTVDIENYIS-VPKTEGQKLAGALKVHVDEYDVDVI-DSQSASKLI--PAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVT-YPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLK---NVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCE-----TNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YKG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176459 for 2153 contacts (-82.0/contact) +
2D Compatibility (PS) -30201 + (NN) -12952 + (LL) 1356
1D Compatibility (HY) -18800 + (ID) 4650
Total energy: -241706.0 ( -112.26 by residue)
QMean score : 0.406
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