Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPFRNIGIIGRLGSTQVLDTIRRLKKFLIDRHLHVILEDTIAEVLPGHGLQTCSRKIMGEICDLVVVVGGDGSMLGAARALARHKVPVLGINRGSLGFLTDIRPDELEAKVGEVLDGQYIVESRFLLDAQVRRGIDSMGQGDALNDVVLHPGKSTRMIEFELYIDGQFVCSQKADGLIVATPTGSTAYALSAGGPIMHPKLDAIVIVPMYPHMLSSRPIVVDGNSELKIVVSPNMQIYPQVSCDGQNHFTCAPGDTVTISKKPQKLRLIHPIDHNYYEICRTKLGWGSRLGGGD
1U0T Chain:A ((5-305))
----RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLS----------------------CELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEAD-GHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSAPFTDRLVRKFRLPVTGWR--
General information:
TITO was launched using:
RESULT:
Template:
1U0T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -187664 for 2190 contacts (-85.7/contact) +
2D Compatibility (PS) -29937 + (NN) -15398 + (LL) 1784
1D Compatibility (HY) -18400 + (ID) 4250
Total energy: -253865.0 ( -115.92 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_1U0T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U0T-query.scw
PDB file :
Tito_Scwrl_1U0T.pdb
: