Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR
3Q8H Chain:C ((24-178))
FRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVV--
General information:
TITO was launched using:
RESULT:
Template:
3Q8H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127256 for 1304 contacts (-97.6/contact) +
2D Compatibility (PS) -17148 + (NN) -11797 + (LL) 244
1D Compatibility (HY) -15600 + (ID) 4800
Total energy: -176357.0 ( -135.24 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_3Q8H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q8H-query.scw
PDB file :
Tito_Scwrl_3Q8H.pdb
: