Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASPSLPGSDCSQIIDHSHVPEFEVATWIKITLILVYLIIFVM-GLLGNSATIRVTQVLQKKGYLQKEVTDHMVSLACSDILVFLIGMPMEFYS-----IIWNPLTTSSYTLSCKLHTFLFEACSYATLLHVLTLSFERYIAICHP---FRYKAVSGPCQVKLLIGFVWVTSALVALPLLFAMGTEYPLVNVPSHRGLTCNRSSTRHHEQPETSNMSICTNLSSRWTVFQSSIFGAFVVYLVVLLSVAFMCWNMMQVLMKSQKGSLAGGTRPPQLRKSESEESRTARRQTIIFLRLIVVTLAVCWMPNQIRRIMAAAKPKHDWTRSYFRAYMILLP--FSETFFYLSSVINPLLYTVSSQQFRRVFVQVLCCRLSLQHANHEKRLRVHAHSTTDSARFVQRPLLFASRRQSSARRTEKIFLSTFQSEAEPQSKSQSLSLESLEPNSGAKPANSAAENGFQEHEV |
| 3CAP Chain:A ((27-323)) | --------------------PQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVT-VQHKK--LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPT-------GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF----GENHAIMGVAFTWVMALACAAPPLVGWSRYIP-------EGMQCSCGIDYYTPHEETNN--------------ESFVIYMFVVHFIIPLIVIFFCY-----------GQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD-----FGPIFMTIPAFFAKT----SAVYNPVIYIMMNKQFRNCMVTTLCCGKN----------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3CAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -185106 for 2194 contacts (-84.4/contact) +
2D Compatibility (PS) -29131 + (NN) -2755 + (LL) 10868
1D Compatibility (HY) -33200 + (ID) 3900
Total energy: -243224.0 ( -110.86 by residue)
QMean score : 0.294
|
|
|