Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MWNSSDANFSCYHESVLGYRYVAVSWGVVVAVTGTVGNVLTLLALAIQPKLRTRFNLLIANLTLADLLYCTLLQPFSVDTYLHLHWRTGATFCRVFGLLLFASNSVSILTLCLIALGRYLLIAHPKLFPQVFSAK--GIVLALVSTWVVGVASFAP---LWPIYI----LVPVVCTCSFDRIRGRPYTTILMGI-YFVLGLSSVGIFYCLIHRQVKRAAQALDQYKLRQASIHSNHVARTDEAMPGRFQELDSRLASGGPSEGISSEPV---------SAATTQTLEGDSSEVGDQINSKRAKQMAEKSPPEASAKAQPIKGARRAPDSSSEF----------------GKVTRMCFAVFLCFALSYIPFLLLNILDARVQA--PRVVHMLAANLTWLNGCINPVLYAAMNRQFRQAYGSILKRGPRSFHRLH |
| 4U16 Chain:A ((22-388)) | -----------------------------LALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGL--AWVISFVLWAPAILFWQYFVGKRTVPPGEC---FIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKETEK----MNIFEMLR--IDEGGGSGGDEAEKLFNQDVDA--AVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQ--QKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTYWNLGYWLCYINSTVNPVCYALCN---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U16.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177479 for 2311 contacts (-76.8/contact) +
2D Compatibility (PS) -33405 + (NN) -3934 + (LL) 4884
1D Compatibility (HY) -25600 + (ID) 3750
Total energy: -239284.0 ( -103.54 by residue)
QMean score : 0.240
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