Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPVGKLVFNQSEPTEFVFRAFTTATEFQVLLFLLFLLLYLMILCGNTAIIWVVCTHSTLRT---PMYFFLSNLSFLELCYTTVVVPLMLSNILGAQKPISLAGCGAQMFFFVTLGST--DCFLLAIMAYDRYVAICHPLHYTLIMTRELCTQMLGGALGLALFPSLQLTALIFTLPFCGHHQEINH---FLCDVPPVLRLACAD--IRVHQAVLYVVSILVLTIPFLLICVSYVFITCAILSIRSAEG-RRRAFSTCSFHLTVVLLQYGCCSLVYLRPRSSTSEDE-DSQIALVYTFVTPLLNPLLYSLRNKDVKGALRSAIIRKAASDAN |
| 4GRV Chain:A ((32-317)) | ---------------------------KVLVTAIYLALFVVGTVGNSVTLFTLARK----SLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFIS---AIWLASALLAIPMLFTMGLQNRSADGTHPGGLVC--TPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYTI-----GIGHLLTKSPSLNAAKSELDK---RNTNGV--ITKDEAEKLFNQDVDAAVR-GILRNAKLKPV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GRV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -194158 for 1661 contacts (-116.9/contact) +
2D Compatibility (PS) -27240 + (NN) -7572 + (LL) 3824
1D Compatibility (HY) -16400 + (ID) 3000
Total energy: -244546.0 ( -147.23 by residue)
QMean score : 0.198
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