Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMEIANVSSPEVFVLLGFSTRPSLETVLFIVVLSFYMVSILGNGIIILVSHTDVHLHTPMYFFLANLPFLDM-----SFTTSIVPQLLAN-LWGPQKTISYGGCVVQFYISHWLGATECVLLATMSYDRYAAICRPLHYTVIMHPQLCLGLALASWLGGLTTSMVGSTLTMLLPLCGNNCIDHFFCEMPLIMQLAC-VDTSLNEMEMYLASFV---FVV---LPLGLILVSYGH----IARAVLKIRSAEGRRKAFNTCSSHVAVVS-------LFYGSIIFMYLQPAKSTSHEQGKF------IALFYTVVTPALNPLIYTLRNTEVKSALRHMVLENCCGSAGKLAQI |
| 1F88 Chain:A ((55-325)) | ------------------------------------------NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPT------GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAF-TWVMALACAAP--------PLVGWSRY------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA----SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF------THQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNC---MVTTLCCGKNPSTTVS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -160213 for 1723 contacts (-93.0/contact) +
2D Compatibility (PS) -23568 + (NN) 3601 + (LL) 6304
1D Compatibility (HY) -21600 + (ID) 3400
Total energy: -198876.0 ( -115.42 by residue)
QMean score : 0.230
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