Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDQSNYSSLHGFILLGFSNHPKMEMILSGVVAIFYLITLVG---NTAIILASLLDSQLHTPMYFFLRNLSFLDL-----CFTTSIIPQML-VNLWGPDKTISYVGCIIQLYVYMWLGSVECLLLAVMSYDRFTAICKPLHYFVVMNPHLCLKMIIMIWSISLANSVVLCTLTLNLPTCGNNILDHFLCELPALVKIACV-------DTTTVEMSVFALGIIIVLTPLILILISYGYIAKAVLRTKSKASQRKAMNTCGSHLTVVSM--------------FYGTIIYMYLQPGNRASKDQGK-FLTL--FYTVITPSLNPLIYTLRNKDMKDALKKLMRFHHKSTKIKRNCKS |
3PQR Chain:A ((37-317)) | --------------------------FSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGP------TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTWVMALA--------------CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV--KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS----DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN---------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PQR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -206515 for 1765 contacts (-117.0/contact) +
2D Compatibility (PS) -24852 + (NN) -719 + (LL) 4372
1D Compatibility (HY) -22400 + (ID) 3250
Total energy: -253364.0 ( -143.55 by residue)
QMean score : 0.195
|
|
|