Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNPANHSQVAGFVLLGLSQVWELRFVFFTVFSAVYFMTVVGNLLIVVIVTSDPHLHTTMYFLLGNLSFLDFCYSSITAPRMLVDLLSGNPTISFGGCLTQLFFFHFIGGIKIFLLTVMAYDRYIAISQPLHYTLIMNQTVCALLMAASWVGGFIHSIVQIALTIQLPF--CGPDKLDNFYCDVPQLIKLAC--TDTFVLELLMVSNNGLVTLMCFLVLLGSYTALLVMLRSHSREGRS------KALST------CASHIAVVTLIFVPC---IYVYTRPFRTFPMDKA--------VSVLYTIVTPMLNPAIYTLRNKEVIMAMKKLWR----RKKDPIGPLEHRPLH |
3VG9 Chain:A ((8-309)) | -------------------------VYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF-----AIGLTPMLGWNNCGQ-------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHI-INCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VG9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -264768 for 1945 contacts (-136.1/contact) +
2D Compatibility (PS) -26473 + (NN) -8489 + (LL) 3332
1D Compatibility (HY) -23600 + (ID) 3550
Total energy: -323548.0 ( -166.35 by residue)
QMean score : 0.302
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