Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADKVQTTLLFLAVGEFSVGILGNAFIGLVNCMDWVKKRKIASIDLILTSLAISRICLLCVILLDCFILVLYPDVYATGKEMRIIDFFWTLTNHLSIWFATCLSIYYFFKIGNFFHPLFLWMKWRIDRVISWILLGCVVLSVFISLPATENLNADFRFCVKAKRKTNLTWSCR-VNKTQHASTKLFLNLATLLPFCVCLMSFFLLILSLRRHIRRMQLSATG------------------------------------------------------------------------------------------------------------------------------------------------------CRDPSTEAHVRALKAVISFLLLFIAYYLSFLIATSSYFMP-------------ETELAVIFGESIALIYPSSHSFILILGNNKLRHASLKVIWKVMSILKGRKFQQHKQI |
| 3ODU Chain:A ((47-498)) | ----NKIFLPTIYSIIFLTGIVGNGLVILVMGYQKK---LRSMTDKYRLHLSVADLLFVIT-LPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV---HATN-SQRPRKLLAEKVVYVGVWIPALLLTIPDFIFAN--V----SEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -255682 for 2060 contacts (-124.1/contact) +
2D Compatibility (PS) -29291 + (NN) -3629 + (LL) 2200
1D Compatibility (HY) -15200 + (ID) 2000
Total energy: -303602.0 ( -147.38 by residue)
QMean score : 0.240
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