Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNAIKLNSIFTELSKKKKPKLIGRGIGCGKGKTSGRGHKGQKARSGTSI-NGFEGGQQSIYTRLPKRGFNPIRRNICSIINVGDVQRLIEAKKIEKNSVIDKEILHKLGFIKSIKDKIKLLNKGKLNERCVFHVDFASEAAKKSVTSIGGSVEILS
3IY9 Chain:L ((1116-1258))
----MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKV-------EGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIE---
General information:
TITO was launched using:
RESULT:
Template:
3IY9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1449533 for 6670 contacts (217.3/contact) +
2D Compatibility (PS) -12045 + (NN) -1309 + (LL) 1340
1D Compatibility (HY) 2000 + (ID) 800
Total energy: 1438719.0 ( 215.70 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_3IY9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IY9-query.scw
PDB file :
Tito_Scwrl_3IY9.pdb
: