Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKVVICDDE----RIIREGLKQIIPWGDYHFNTIYTAKDGVEALSLIQQHQPELVITDIRMPRKNGVDLLNDI----ALLDCNVIILSSYDDFEYMKAGIQHHVLDYLLKPVDHAQLEVILGRLVRTLLEQQSQNGRSLASCHDAFQPLLKVEYDDYYVNQIVDQIKQSYQTKVTVSDLIQHIDVSESYAMRTFKDHVGITIVDYLNRYRILQSLQLLDRHYKHYEIADKVGFSEYKMFSYHFKKYLQMSPSDYCKQAK
3FFW Chain:A ((5-126))
-LKFLVVDDQSTMRRIVRNLLKEL------GFNNVEEAEDGVDALNKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL-----------------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3FFW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109050 for 886 contacts (-123.1/contact) +
2D Compatibility (PS) -12423 + (NN) -8980 + (LL) 10428
1D Compatibility (HY) -12000 + (ID) 2000
Total energy: -134025.0 ( -151.27 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_3FFW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FFW-query.scw
PDB file :
Tito_Scwrl_3FFW.pdb
: