Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCK-VSERMLDIANE-ILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
3NOF Chain:A ((35-110))
-----------------------WATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLREL-
General information:
TITO was launched using:
RESULT:
Template:
3NOF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46508 for 418 contacts (-111.3/contact) +
2D Compatibility (PS) -7505 + (NN) 463 + (LL) 1476
1D Compatibility (HY) -4000 + (ID) 1200
Total energy: -57274.0 ( -137.02 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_3NOF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NOF-query.scw
PDB file :
Tito_Scwrl_3NOF.pdb
: