Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFEGKLIGKDLKVAIVVSRFNDFITGRLLEGAKDTLIRHDVNEDNIDVAFVPGAFEIPLVAKKLASSGNYDAIITLGCVIRGATSHYDYVCNEVAKGVSKVNDQTNVPVIFGILTTESIEQAVERAGTKAGNKGAEAAVSAIEMANLLKSIKA
1NQU Chain:A ((4-154))
--YEGKLTAEGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSLR-
General information:
TITO was launched using:
RESULT:
Template:
1NQU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106164 for 1300 contacts (-81.7/contact) +
2D Compatibility (PS) -16995 + (NN) -9722 + (LL) 272
1D Compatibility (HY) -14000 + (ID) 3800
Total energy: -150409.0 ( -115.70 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_1NQU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NQU-query.scw
PDB file :
Tito_Scwrl_1NQU.pdb
: