Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSTVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDSTKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEK-SNEKTQFEVTYTRNQDIL-KNRPGIHYAPPILEKNKDGQRLI-----VTYEVDWKNKTVKVVDKYSDDNKPYKEG |
| 4IYA Chain:A ((13-288)) | ----------------------------------------------------------------ENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKT-NDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSK-SVQWGIKANSFITSLGKMSGHDPNLFVGYKPYS--QNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSALEGSRIHNAFVNRNYTVKYEVNWKTHEIKV-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4IYA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 23043 for 2102 contacts (11.0/contact) +
2D Compatibility (PS) -28457 + (NN) -6031 + (LL) 4352
1D Compatibility (HY) -16400 + (ID) 4800
Total energy: -28293.0 ( -13.46 by residue)
QMean score : 0.229
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