Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKVVFLLLFMLGGLEAHSDYCSDHCEGTPDSRIPPMGFHFSFVHSV----KYYLQDPQKRDHKLEKCHKAFDSTLKVNFITKSFKKDCKHAQMALEQAQKETP |
1VDH Chain:A ((143-172)) | --------------------------------------CFYPMNKRRQGQDNWYMLPAKERASLMKAHGETGRKYQGEVMQVISGAQGLDDWEWGVDLFSEDPV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VDH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 5954 for 94 contacts (63.3/contact) +
2D Compatibility (PS) -2719 + (NN) 463 + (LL) 1860
1D Compatibility (HY) -1600 + (ID) 100
Total energy: 3858.0 ( 41.04 by residue)
QMean score : 0.136
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