Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTFEPYPFERLRALFKEITPKKKG---LDLGIGEPRFETPKFIQDAL----KSHTHSLNIYPKSAFEESLREAQRGFFKRRFKIELK-ENELVSTLGSREVLFNFPSFVLFDYPNPTIAYPNPFYQIYEGSAQFARAKSLLMPLVKENDFTPSLNEKELQEV----DLVILNSPNNPTGRTLSLEELIAWVKLALKHDFILINDECYSEI-YENTPPSSLLEACMLADNGAFKNVLVIHSLSKRSSAPGLRSGFIAGDSSLLEKYKAFRTYLGYTSANAIQKASEVAWLDD--------RHAEFFRNIYANNLKLARKIFKETLIYPYSF------YAYLPVKDGENFAKTLYQNEGITTLPALYLGRNHIGADYVRLALVYDTSLLEKPLEIIEAYRENYA |
| 2X5D Chain:A ((29-393)) | ----------------KMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVA-----------TSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHL-MLATLDHGD-TILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNEL-ERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQV-----PGAKDIAVEFFTLS-SYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASMYVWAKIPEPYAHL---GSLEFAKKLLQDAKVSVSPGIGFG--DYGDDHVRFALIENRDRLRQAVRGIKAMFRADG |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2X5D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -159931 for 2785 contacts (-57.4/contact) +
2D Compatibility (PS) -35158 + (NN) -13820 + (LL) 2184
1D Compatibility (HY) -19600 + (ID) 4800
Total energy: -231125.0 ( -82.99 by residue)
QMean score : 0.440
|
|
|