Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTEILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAILQEKRQKN
2KNC Chain:B ((724-734))
-----------------------------RKEFAKFEEER-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2KNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2057 for 34 contacts (60.5/contact) +
2D Compatibility (PS) -1062 + (NN) 1092 + (LL) 5020
1D Compatibility (HY) 400 + (ID) 50
Total energy: 7457.0 ( 219.32 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_2KNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KNC-query.scw
PDB file :
Tito_Scwrl_2KNC.pdb
: