Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAISKEEVLEYIGSLSVLELSELVKMFEEKFGVSATPTVVAGAAVAGGAAAE--SEEKTEFNVILADSGAEKIKVIKVVREITGLGLKEAKDATEK--TPH-VLKEGVNKEEAETIKKKLEEVGAKVEVK
1DD3 Chain:A ((4-128))
-----DEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKTEFDVVLKSFGQNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVELK
General information:
TITO was launched using:
RESULT:
Template:
1DD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32661 for 783 contacts (-41.7/contact) +
2D Compatibility (PS) -13220 + (NN) -6006 + (LL) 592
1D Compatibility (HY) -10000 + (ID) 3850
Total energy: -65145.0 ( -83.20 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_1DD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DD3-query.scw
PDB file :
Tito_Scwrl_1DD3.pdb
: