Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLIVQKYGGTSMGSIERIHNVAQRVLESVKLGHQVVVVVSAMSGETDRLLEFGKNFSHNPNKREMDRIVSAGEWISSAALSMALERYGHRAISLSGKEAGILTSSHFQNAVIQSIDT-QRITELLEKNYIVVIAGFQGADIQGETTTLGRGGSDLSAVALAGALKAHLCEIYTDVDGVYTTDPRIEEKAQKIAQISYDEMLELASMGAKVLLNRSVELAKKLSVKLVTRNSFN-HSEGTLIVAEKDFKGERMETPIVSGIALDKNQARVSM--EGVEDRPGIAAEIFGALAEYRINVDMIVQTIGRDGKTDLDFTIVKTQIEETKQAL------KPFLAQ--MDSIDYDENIAKVSIVGVGMKSHSGVASIAFKALAKDNINIMMIS--TSEIKISVLIDIKYAELAVRTLHAVYQLDQ |
| 3C1M Chain:A ((74-467)) | ---------------EKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVL-IGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDME-----MSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQG---SSETNISLVVSEEDVDKALKALKREFGD-SFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -179548 for 3036 contacts (-59.1/contact) +
2D Compatibility (PS) -40371 + (NN) -12156 + (LL) 1596
1D Compatibility (HY) -27200 + (ID) 6800
Total energy: -264479.0 ( -87.11 by residue)
QMean score : 0.450
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