Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLGISGASGIPLALRFLEKL-PKEIEIFVVASKNAHVVALEESNINLKNAMKDLRPSAT-----------FFNEQDIHASIASGSYGIHKMAIIPASMDMVAKIAHGFGGDLISRSASVMLKEKRPLLIAPREMPLSAIMLENLLKLAHSNAIIAPPMMTYYTQSKTLEAMQDFLVGKWFDSLGIENDLYPRWGMN
4ZAG Chain:A ((6-201))
-RITLAMTGASGAQYGLRLLDCLVQEEREVHFLISKAAQLVMATQTDVALPAKPQAMQAFLTEYCGAAAGQIRVFGQNDWMAPPASGSSAPNAMVICPCSTGTLSAVATGACNNLIERAADVALKERRPLVLVPREAPFSSIHLENMLKLSNLGAVILPAAPGFYHQPQSVEDLVDFVVARILNTLGIPQDMLPRWGEQ
General information:
TITO was launched using:
RESULT:
Template:
4ZAG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148666 for 1478 contacts (-100.6/contact) +
2D Compatibility (PS) -20041 + (NN) -9158 + (LL) 208
1D Compatibility (HY) -14400 + (ID) 3500
Total energy: -195557.0 ( -132.31 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_4ZAG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZAG-query.scw
PDB file :
Tito_Scwrl_4ZAG.pdb
: