Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LTKKYLICSDIDGTLLR-QDQTVSKKTRDLIQTLEKDGHIFSISTGR---MYRSAREVGFQVSSSGHVIASNGSYAAIRDEQLLKTTLEEKAIRSTYDIMSDFDLPLFFFSTNTLFYTKEPPAFFQNLADKSRLDTGHNSFSLVSINE--KGIFDENMHQFLNAIVVAEEDASK-LTEVRAALNEANGIRVLSSHHNNLEI---LPANSD-------KKTAVEALGKHYNIPRERIITFGDGENDIGMLQYAGTGVAMANASDNVKAAANHLTDTNEADGVYKFLKEFIS |
| 1YMQ Chain:A ((8-258)) | ---------DIDGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAIINNLSELQDRNLIDGY-ITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIFVEE-------------------------HN-ISVCQPNEMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVLPSI-PTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVTAPIDEDGISKAMKHF-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YMQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -50370 for 1898 contacts (-26.5/contact) +
2D Compatibility (PS) -25007 + (NN) -6274 + (LL) 2360
1D Compatibility (HY) -16000 + (ID) 3700
Total energy: -98991.0 ( -52.16 by residue)
QMean score : 0.458
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