Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDALFNYKEFVRLSHE----GNIKYEKLKVPKHTDLVDTASQRNNHVYLIVEGFVSISMNP--QSNSIYTVLGKGSFVNYYSLFQGNV-DDFLFTAISPCTIYKYSFKDLEYFLSMFPENFGFQFFIMRDLARHAFF----KSLFAETSSSDKLELSFSNMGKLHGTLYEKDSVILPKEMRTSTIAAYSNLSKSSFYKQLTLLKEHGKIWKKGKEW-VVKDKGLYNYVKVRQFDD
3DKW Chain:A ((12-226))
----QSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGE-PAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNT---PLALALLAKLSTRLHQRIDEIETLSLKNATHRVVRYLLTLAAHAPG----ENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISILDRERLECF--------
General information:
TITO was launched using:
RESULT:
Template:
3DKW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78562 for 1292 contacts (-60.8/contact) +
2D Compatibility (PS) -21712 + (NN) -6193 + (LL) 1812
1D Compatibility (HY) -6800 + (ID) 1250
Total energy: -112705.0 ( -87.23 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_3DKW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DKW-query.scw
PDB file :
Tito_Scwrl_3DKW.pdb
: