Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLFFEEWGPILWQGFLETLTMTGITLVISLAIGLPLGVFLTLTRKGG-QSENLVAYSILNWVINILRSLPFIILLFLMIP-VTRFVVGTTIGIQGVIMPLVVFTAPYIARLMESALLEVDRGVVEAYQAMGISTPKIIWSVVIREARSGIVLGLTIATIGLIGATAMAGLVGAGGL---GTIAYQYGFQRFEPTVMYTTIIILIIMVQALQSFGNFLSRRLKKD
4YMT Chain:C ((10-215))
------KYTPLFISGLIMTLKLT----FLAVTIGVLMGLFIALMKMSSIKPIKLVASS----YIEVIRGTPLLVQLLLIYNGLMQFGMNIPAFTAGV-SALAINSSAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIVSVIGFADLTRQADIIQSVTYRYFEPYIIIAA--IYFVMTLTFSKLLSLFERRLR--
General information:
TITO was launched using:
RESULT:
Template:
4YMT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183644 for 1431 contacts (-128.3/contact) +
2D Compatibility (PS) -20626 + (NN) -351 + (LL) 2040
1D Compatibility (HY) -23200 + (ID) 2450
Total energy: -228231.0 ( -159.49 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_4YMT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMT-query.scw
PDB file :
Tito_Scwrl_4YMT.pdb
: