Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDKLMGKAAIVTESSYGIERFLDEDEQIIQIFKFIRDEVIITSKGIFNIDAQGITGKKVEYKFFPKKALKYVSIETAGTLDRDFDLKIGVDGNTVVTQNTSFSAPISLKVHKNDTEMGFALYKMIKGML
2EER Chain:A ((23-66))
-----------------------------------------------------------------PKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTL---------------------
General information:
TITO was launched using:
RESULT:
Template:
2EER.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4739 for 179 contacts (-26.5/contact) +
2D Compatibility (PS) -4699 + (NN) -1527 + (LL) 7208
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -6757.0 ( -37.75 by residue)
QMean score : 0.352
(partial model without unconserved sides chains):
PDB file :
Tito_2EER.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EER-query.scw
PDB file :
Tito_Scwrl_2EER.pdb
: