Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHGIRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQKNR
1NN4 Chain:A ((3-146))
-KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAKMIVDAWLGAQYEGGRHQQRVEAITAIEQ---
General information:
TITO was launched using:
RESULT:
Template:
1NN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85112 for 1205 contacts (-70.6/contact) +
2D Compatibility (PS) -15841 + (NN) -8202 + (LL) 292
1D Compatibility (HY) -14800 + (ID) 3050
Total energy: -126713.0 ( -105.16 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_1NN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NN4-query.scw
PDB file :
Tito_Scwrl_1NN4.pdb
: