Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIFCGIMSIQAGFIGALAEILSPDSKKNNLFMIPEDLAASSGYLMSLAMVLAGILIICAYRNDFLIFMALILWLFGLIFGLIFTPSYSGFYFRPIVCLISFLMGLFIFTDYTRHQDTGEER
2JO1 Chain:A ((10-39))
--------------------------------TYDYQSLQIGGLVIAGILFILGILIVLSRR------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JO1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6187 for 118 contacts (-52.4/contact) +
2D Compatibility (PS) -3024 + (NN) -1990 + (LL) 7244
1D Compatibility (HY) -3200 + (ID) 300
Total energy: -7457.0 ( -63.19 by residue)
QMean score : -0.120
(partial model without unconserved sides chains):
PDB file :
Tito_2JO1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JO1-query.scw
PDB file :
Tito_Scwrl_2JO1.pdb
: