Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEAIERRDDDMTIVSFEVEISAPIQEVFALLTTNTGLAKWFN-ELEVGELGADGYLLFVMTPEEKITMPIRAFEPNQKLA--FEWDQDEV---AFELNEI----TANKTRLTFTEQLTTITEHSPRDISGWHICLKKLQASAEGKIYDFNKTEFKTLFAKYQKELNIEK
2LAK Chain:A ((10-141))
-------------VVRREAHLAAPPAAVFALMTDPEKILRWMGTEAEV-EPEPGGLYLVNVTGARFARGSFREVVPVHRLAYSFGWDGSEVVPPGSSLVEIDLIEQGGGTLLRLTHSGLPSAEQCAGHEEGWAHYLGRLTEVAAGR------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LAK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20005 for 748 contacts (-26.7/contact) +
2D Compatibility (PS) -12632 + (NN) 3389 + (LL) 2848
1D Compatibility (HY) -6800 + (ID) 1950
Total energy: -35150.0 ( -46.99 by residue)
QMean score : 0.327
(partial model without unconserved sides chains):
PDB file :
Tito_2LAK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LAK-query.scw
PDB file :
Tito_Scwrl_2LAK.pdb
: