Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLLNEENSFYNVDLLNLLKDSSEAVLPYKRIRFRRNQQILAEGAETDYFYIIEDGVVSMSKNTCK-EDSIINFLGKQECIGPLTLLGGAKSPVNYTTISEVSVYQFERKYVLNKFLSSPDVFWQMNALMQSMVTPM---LEREGYVNLPSSEKVLAGLIACGERFGRIESDGSCLIPYYFTQKILGNYLNLARAYVATNLRKLEEDGIIALSPKPWRVNNFEIHKQKLKENHEPYI
3H3U Chain:A ((29-217))
-------------------------------VDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPG--RVAKQLLQLAQRFGTQEG-GALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSE--------------
General information:
TITO was launched using:
RESULT:
Template:
3H3U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114763 for 1297 contacts (-88.5/contact) +
2D Compatibility (PS) -19858 + (NN) -8027 + (LL) 3164
1D Compatibility (HY) -11600 + (ID) 2050
Total energy: -153134.0 ( -118.07 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_3H3U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H3U-query.scw
PDB file :
Tito_Scwrl_3H3U.pdb
: