Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDALLQE-NEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQNF-GALLQEPNYDRKIFQD
4JAL Chain:A ((10-165))
MALNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGD---YLMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGAVL------------
General information:
TITO was launched using:
RESULT:
Template:
4JAL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86553 for 1151 contacts (-75.2/contact) +
2D Compatibility (PS) -16828 + (NN) -7746 + (LL) 644
1D Compatibility (HY) -12800 + (ID) 3400
Total energy: -126683.0 ( -110.06 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_4JAL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JAL-query.scw
PDB file :
Tito_Scwrl_4JAL.pdb
: